species:   Clros
pid:       PID1844
parent:    cro-mir-13
paralog:   
locus:     CADEHS020000533.2:499194-499231
matures:   ['UUCUUCCUUGAUGCGUCCC', 'GACACCAAGGAUUCUCA']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000533.2:499194-499231

133 out of bounds
321 alignments
321 proper strand
317 stranded perfect matches

**************************************
UGACACCAAGGAUUCUCAUUUCUUCCUUGAUGCGUCCC
.(((.(((((((...........))))))..).)))..
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=258 c
-GACACCAAGGAUUCUCA-------------------- l=17 a=0 c*
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=258 ma
-GACACCAAGGAUUCUCA-------------------- l=17 a=0 ma*

UGACACCAAGGAUUCUaA-------------------- l=18 a=1 
----------GAUUCUCAUUUCUUCCUUGAUGCa---- l=24 a=1 
----------GAUUCUCAUUUCUUCCUUGAUGCGU--- l=25 a=4 
-----------AUUCUCAUUUCUUCCUUGAUGCGa--- l=24 a=1 
------------UUCUCAUUUCUUCCUUGAUG------ l=20 a=7 
------------UUCUCAUUUCUUCCUUGAUGC----- l=21 a=1 
-------------------UUCUUCCUUGAUGCGUC-- l=17 a=9 
-------------------UUCUUCCUUGAUGCGUCC- l=18 a=36 
-------------------UUCUUCCUUGAUGCGUCCC l=19 a=258 (c,ma)
-------------------UUCUUCCcUGAUGCGUCCC l=19 a=1 
---------------------CUUCCUUGAUGCGUCCC l=17 a=2 

mb-01010
ax-1001101
ku-11
ss-101011101110
fn-111
